I mean when they don't misunderstand but the idea that pops into their head to resolve the issue (like in their case lack of stamina) is such a weird convoluted process that the audience is left thinking "lol, what are you doing?" That usually only happens in comedies that feature romantic couples.
I read a story where a married couple were having less sex because the wife was heavily pregnant and she was not happy about that. So she tires all this things including caving into her husbands weird otaku tendencies (cosplaying as his fav character) in order to try and seduce him into having sex with her, instead of just straight up telling him that she wants to have sex. Like multiple chapters were devoted this this issue.
as much as i do not like the cliche misunderstanding shtick, I liked the way this one was handled a lot better than most other ones. Although Yura did jump the gun (or the moon at this point) at least he tried to stay positive. And then he felt like he was rewarded with his boo-thang coming home "early".
Also when he got upset a least he didnt just blurt out his accusations, he just told him to get to the point. Its the little things that make me happy.
Of course my preferred course of action is if the misunderstanding never happened in the first place and instead the audience is left to think a misunderstanding had occurred or the more comedic route where the person doesn't misunderstand but solves the issue in a completely backwards way.